Publication - CD Genomics

Article	Journal	Published	Services	Species
A de novo assembly of genomic dataset sequences of the sugar beet root maggot Tetanops myopaeformis, TmSBRM_v1.0	Data in Brief	2024	Microbial Whole Genome Sequencing	The sugar beet root maggot Tetanops myopaeformis
Identification of circular RNAs regulating cardiomyocyte proliferation in neonatal pig hearts	JCI insight	2024	CircRNA Sequencing	neonatal pig hearts
An independent origin of an annual life cycle in a North American killifish species	Biological Journal of the Linnean Society	2024	Mitochondrial DNA (mtDNA) Sequencing	North American killifish species, Millerichthys robustus
Combinations of Bacteriophage Are Efficacious against Multidrug-Resistant Pseudomonas aeruginosa and Enhance Sensitivity to Carbapenem Antibiotics	Viruses	2024	Whole Genome Sequencing	Pseudomonas Phages
Genome sequence, antibiotic resistance genes, and plasmids in a monophasic variant of Salmonella typhimurium isolated from retail pork	Microbiology Resource Announcements	2024	Whole Genome Sequencing	Salmonella isolate from retail pork
IL-4 drives exhaustion of CD8+ CART cells	Nature Communications	2024	ATAC-Seq;CRISPR Screen Sequencing	CART cells
Reduced representation bisulfite sequencing (RRBS) analysis reveals variation in distribution and levels of DNA methylation in white birch (Betula papyrifera) exposed to nickel	Genome	2024	Reduced Representation Bisulfite Sequencing	white birch (Betula papyrifera)
Black soldier fly bioconversion to cultivated meat media components using blue catfish gut microbiome	Bioresource Technology Reports	2024	16S/18S/ITS Amplicon Sequencing	bacterial genus
Fungi: friends or foes—an outreach science initiative for the collection of airborne fungal spores by high school students	Journal of Microbiology and Biology Education	2024	Microsatellite Genotyping Service	Aspergillus fumigatus strains
Distinct functions of wild-type and R273H mutant Δ133p53α differentially regulate glioblastoma aggressiveness and therapy-induced senescence	Cell Death & Disease	2024	Genomics Sequencing	NCI-Frederick cancer DCTD tumor/cell line repository
Eubacterium rectale detoxification mechanism increases resilience of the gut environment	bioRxiv	2024	RNA-Seq	Murine Colon
Elucidation of the Aspergillus fumigatus tRNA-derived RNA repertoire from conidia and mycelium	bioRxiv	2024	RNA-seq	Aspergillus fumigatus
Bacterial communities of Cassiopea in the Florida Keys share major bacterial taxa with coral microbiomes	bioRxiv	2024	Full-Length 16S/18S/ITS Amplicon Sequencing	microbiomes
Targeting the CLK2/SRSF9 splicing axis in prostate cancer leads to decreased ARV7 expression	Molecular Oncology	2024	RNA-Seq	enzalutamide resistant cells
The chromosome-scale genome and the genetic resistance machinery against insect herbivores of the Mexican toloache, Datura stramonium	G3: Genes, Genomes, Genetics	2024	ddRAD-seq	Mexican toloache, Datura stramonium
StarD5 levels of expression correlate with onset and progression of steatosis and liver fibrosis	American Journal of Physiology-Gastrointestinal and Liver Physiology	2024	RNA-Seq	mice fed,livers
High-Fat Diets Fed during Pregnancy Cause Changes to Pancreatic Tissue DNA Methylation and Protein Expression in the Offspring: A Multi-Omics Approach	International Journal of Molecular Sciences	2024	Whole Genome Bisulfite Sequencing (WGBS)	Mice, pancreatic tissue
Limited impact of weathered residues from the Deepwater Horizon oil spill on the gut-microbiome and foraging behavior of sheepshead minnows (Cyprinodon variegatus)	Journal of Toxicology and Environmental Health	2024	Metagenomic Shotgun Sequencing;16S/18S/ITS Amplicon Sequencing	Bacteria
Drivers of genomic diversity and phenotypic development in early phases of domestication in Hermetia illucens	Insect Molecular Biology	2024	2b-RAD	Hermetia illucens
Cancer-associated DNA hypermethylation of Polycomb targets requires DNMT3A dual recognition of histone H2AK119 ubiquitination and the nucleosome acidic patch	Science Advances	2024	Reduced Representation Bisulfite Sequencing	mouse
Use of biostimulants for water stress mitigation in two durum wheat (Triticum durum Desf.) genotypes with different drought tolerance	Plant Stress	2024	Genotyping by Sequencing (GBS)	durum wheat
Role of the histone variant H2A.Z.1 in memory, transcription, and alternative splicing is mediated by lysine modification	Neuropsychopharmacology	2024	RNA-Seq	Mice
Evolutionary dynamics in gut-colonizing Candida glabrata during caspofungin therapy: Emergence of clinically important mutations in sphingolipid biosynthesis	PLoS pathogens	2024	16S/18S/ITS Amplicon Sequencing	Candida glabrata
Rubisco from two ecotypes of Plantago lanceolata L. that are native to sites differing in atmospheric CO2 levels	bioRxiv	2024	Chloroplast DNA (cpDNA) Sequencing	Plantago lanceolata L.
Effects of Tuber borchii inoculation on Pinus pinea 3 years after establishment along a latitudinal gradient in the Southern Hemisphere	Agroforestry Systems	2024	16S/18S/ITS Amplicon Sequencing	Stone pine (Pinus pinea)
Repeated immunization with ATRA-containing liposomal adjuvant transdifferentiates Th17 cells to a Tr1-like phenotype	Journal of Autoimmunity	2024	RNA-Seq	Mice
Isolation of Plastic Digesting Microbes from the Gastrointestinal Tract of Tenebrio Molitor	bioRxiv	2024	16S/18S/ITS Amplicon Sequencing	Bacteria
Mammalian D-Cysteine controls insulin secretion in the pancreas	bioRxiv	2024	Targeted Bisulfite Sequencing;NGS-BSP	Mice
Disruption of tRNA biogenesis enhances proteostatic resilience, improves later-life health, and promotes longevity	Plos Biology	2024	Ribosome Profiling (Ribo-seq);RNA-Seq	Fruit fly
Nutrient structure dynamics and microbial communities at the water–sediment interface in an extremely acidic lake in northern Patagonia	Frontiers in Microbiology	2024	Metagenomic Shotgun Sequencing	Bacteria
Exploiting DNA methylation in cassava under water deficit for crop improvement	Plos one	2024	MethylRAD-Seq	cassava
Triphenyl Phosphate Alters Methyltransferase Expression and Induces Genome-Wide Aberrant DNA Methylation in Zebrafish Larvae	Chemical Research in Toxicology	2024	Reduced Representation Bisulfite Sequencing	Zebrafish Larvae
Cholestenoic acid as endogenous epigenetic regulator decreases hepatocyte lipid accumulation in vitro and in vivo	American Journal of Physiology-Gastrointestinal and Liver Physiology	2024	Whole Genome Bisulfite Sequencing (WGBS)	Mice
Genomic transmission clusters and circulating lineages of Mycobacterium tuberculosis among refugees residing in refugee camps in Ethiopia	Infection, Genetics and Evolution	2023	Whole Genome Sequencing	Mycobacterium tuberculosis
The HLA class I immunopeptidomes of AAV capsid proteins	Frontiers in Immunology	2023	HLA Typing	Human
Shifts in the rhizosphere microbiome and exudation profile of avocado (Persea americana Mill.) during infection by Phytophthora cinnamomi and in presence of a biocontrol bacterial strain	CABI Agriculture and Bioscience	2023	Metagenomic Shotgun Sequencing;RNA-Seq	Bacterial and Fungal
An assembly of genomic dataset sequences of the sugar beet root maggot Tetanops myopaeformis, TpSBRM_v1.0	bioRxiv	2023	Genomics Sequencing	Sugar beet root maggot Tetanops myopaeformis
IL-10-producing memory B regulatory cells as a novel target for HLA-G to prolong human kidney allograft survival	Human Immunology	2023	RNA-Seq	human
Enhancement of Probiotic Yogurts’ Characteristics using a 24-hour fermentation process	Journal of Student Research	2023	16S/18S/ITS Amplicon Sequencing	Bacteria
Genomic Patterns of Iberian Wild Bees Reveal Levels of Diversity, Differentiation and Population Structure, Supporting the 'Refugia within Refugia' Hypothesis	Diversity	2023	RAD-seq Service	Bacteria
Risk of Alzheimer’s Disease is Associated with Longitudinal Changes in Plasma Biomarkers in the Multiethnic Washington Heights, Inwood Columbia Aging Project Cohort	medRxiv	2023	Genotyping	Bacteria; Virus
A chromosome-scale and haplotype-resolved genome assembly of tetraploid blackberry (Rubus L. subgenus Rubus Watson)	bioRxiv	2023	RNA-Seq	Plant
Abundance and phylogenetic distribution of eight key enzymes of the phosphorus biogeochemical cycle in grassland soils	Environmental Microbiology	2023	Metagenomic Shotgun Sequencing	Soil microorganisms
Complete genome sequence of the probiotic Bifidobacterium adolescentis strain iVS-1	Microbiology Resource Announcements	2023	Whole Genome Sequencing	Bifidobacterium adolescentis strain iVS-1
Sorgoleone degradation by sorghum-associated bacteria; an opportunity for enforcing plant growth promotion	bioRxiv	2023	Whole Genome Sequencing	Bacteria
Highly-conserved regulatory activity of the ANR family in the virulence of diarrheagenic bacteria through interaction with master and global regulators	Scientific Reports	2023	Genomics Sequencing	Bacteria
Sex hormones, sex chromosomes, and microbiota: identification of Akkermansia muciniphila as an estrogen-responsive bacterium	Microbiota and Host	2023	Whole Genome Sequencing	Bacteria
Broad-Spectrum, Potent, and Durable Ceria Nanoparticles Inactivate RNA Virus Infectivity by Targeting Virion Surfaces and Disrupting Virus–Receptor Interactions	Molecules	2023	Microbial Whole Genome Sequencing	Virus
Mitochondrial DNA Haplogroups and Variants Predispose to Chagas Disease Cardiomyopathy	Hearts	2023	RNA-Seq	Human Heart Tissue and Blood
The Restriction–Modification Systems of Clostridium carboxidivorans P7	Microorganisms	2023	Genotyping by Sequencing (GBS)	Clostridium carboxidivorans
Natural Recombination among Type I Restriction-Modification Systems Creates Diverse Genomic Methylation Patterns among Xylella fastidiosa Strains	Applied and Environmental Microbiology	2023	Genomics Sequencing	Xylella fastidiosa Strains
Restriction endonuclease cleavage of phage DNA enables resuscitation from Cas13-induced bacterial dormancy	Nature microbiology	2023	Epigenomics Sequencing;PacBio SMRT Sequencing	Bacteria; Virus
KMT2A associates with PHF5A-PHF14-HMG20A-RAI1 subcomplex in pancreatic cancer stem cells and epigenetically regulates their characteristics	nature communications	2023	ChIP-Seq	human
Blood RNA-Seq profiling reveals a set of circular RNAs differentially expressed in frail individuals	Immunity & Ageing	2023	RNA-Seq	human Whole blood
A chemosensory-like histidine kinase is dispensable for chemotaxis in vitro but regulates the virulence of Borrelia burgdorferi through modulating the stability of RpoS	PLoS Pathogens	2023	RNA-Seq	mouse skin tissues
Curtobacterium allii sp. nov., the actinobacterial pathogen causing onion bulb rot	Antonie van Leeuwenhoek	2023	Genomics Sequencing	Curtobacterium
Simultaneous carbon catabolite repression governs sugar and aromatic co-utilization in Pseudomonas putida M2	Applied and environmental microbiology	2023	Small RNA Sequencing	Pseudomonas putida M2
Genetic mapping of the Rcs2 locus in soybean cultivar Kent for resistance to frogeye leaf spot	Crop Science	2023	Whole Genome Sequencing	soybean cultivar Kent
Pinpointing Rcs3 for frogeye leaf spot resistance and tracing its origin in soybean breeding	Molecular Breeding	2023	Genotyping	Soybean
In the land of the blind: Exceptional subterranean speciation of cryptic troglobitic spiders of the genus Tegenaria (Araneae: Agelenidae) in Israel	Molecular Phylogenetics and Evolution	2023	ddRAD-seq	Spider
Evaluation of Plasma Biomarkers for A/T/N Classification of Alzheimer Disease Among Adults of Caribbean Hispanic Ethnicity	JAMA Network Open	2023	Genotyping	Human
In vitro assays reveal inherently insecticide-tolerant termite symbionts	Frontiers in Physiology	2023	Genomics Sequencing	Bacteria
Untangling the Role of Pathobionts from Bacteroides Species in Inflammatory Bowel Diseases	bioRxiv	2023	Full-Length 16S/18S/ITS Amplicon Sequencing	Microbes
Presence and activity of nitrogen-fixing bacteria in Scots pine needles in a boreal forest: a nitrogen-addition experiment	Tree Physiology	2023	Whole Genome Sequencing	Bacteria
Exploring phenotypic and genetic variability in hemp (Cannabis sativa)	bioRxiv	2023	Genotyping by Sequencing (GBS)	Cannabis sativa
SNP rs11185644 in RXRA gene and SNP rs2235544 in DIO1 gene predict dosage requirements in a cross-sectional sample of hypothyroid patients	BMC Endocrine Disorders	2023	Genotyping	human blood
Increased Production of Pathogenic, Airborne Fungal Spores upon Exposure of a Soil Mycobiota to Chlorinated Aromatic Hydrocarbon Pollutants	Microbiology Spectrum	2023	Genotyping	A. fumigatus
Egr2 Deletion in Autoimmune-Prone C57BL6/lpr Mice Suppresses the Expression of Methylation-Sensitive Dlk1-Dio3 Cluster MicroRNAs	ImmunoHorizons	2023	Reduced Representation Bisulfite Sequencing	Mice
Indole-3-Propionic Acid, a Gut Microbiota Metabolite, Protects Against the Development of Postoperative Delirium	Annals of Surgery	2023	Metagenomic Shotgun Sequencing	Mice
Isolation and Characterization of Bacteria Associated with Onion and First Report of Onion Diseases Caused by Five Bacterial Pathogens in Texas, U.S.A.	Plant Disease	2023	Whole Genome Sequencing	Bacteria

Article	Journal	Published	Services	Species
Small but significant genetic differentiation among populations of Phyllachora maydis in the midwestern United States revealed by microsatellite (SSR) markers	bioRxiv	2023	Microsatellite Genotyping Service	Phyllachora maydis
Maresin-1 promotes neuroprotection and prevents disease progression in experimental models of multiple sclerosis through metabolic reprogramming and shaping innate and adaptive disease-associated cell types	bioRxiv	2023	RNA-Seq	Mice
Collection of genetic data in ethnic-based studies across Aymaras, Quechuas and Mestizos: the challenges of the Genetics of Alzheimer’s in Peruvian Population (GAPP) study	Alzheimer's & Dementia	2022	Genome-wide association study (GWAS)	human
Methylation in the CHH Context Allows to Predict Recombination in Rice	International Journal of Molecular Sciences	2022	Whole Genome Bisulfite Sequencing (WGBS)	Rice
Identification of the genetic elements involved in biofilm formation by Salmonella enterica serovar Tennessee using mini-Tn10 mutagenesis and DNA sequencing	Food Microbiology	2022	Whole Genome Sequencing	Salmonella enterica serovar
A chromosome-level genome resource for studying virulence mechanisms and evolution of the coffee rust pathogen Hemileia vastatrix	bioRxiv	2022	Full-Length 16S/18S/ITS Amplicon Sequencing	coffee rust pathogen Hemileia vastatrix
Exploring the Neoantigen burden in Breast Carcinoma Patients	bioRxiv	2022	Genomics Sequencing	human
Haploidy and aneuploidy in switchgrass mediated by misexpression of CENH3	The Plant Genome	2022	Genomics Sequencing	plant
Human Immature Dental Pulp Stem Cells Did Not Graft into a Preexisting Human Lung Adenocarcinoma	Case Reports in Oncology	2022	mRNA Sequencing Service	human
Optical Genome and Epigenome Mapping of Clear Cell Renal Cell Carcinoma	bioRxiv	2022	Whole Exome Sequencing	human Clear Cell Renal Cell Carcinoma
Disclosing azole resistance mechanisms in resistant Candida glabrata strains encoding wild-type or gain-of-function CgPDR1 alleles through comparative genomics and transcriptomics	G3	2022	Whole Genome Sequencing	Candida glabrata
Finger millet RNA-seq reveals differential gene expression associated with tolerance to aluminum toxicity and provides novel genomic resources	Frontiers in Plant Science	2022	RNA-Seq	Finger millet
Chaperone-Mediated Autophagy Controls Proteomic and Transcriptomic Pathways to Maintain Glioma Stem Cell Activity	Cancer research	2022	RNA-Seq	Mice
Genome-wide CRISPR screen identified a role for commander complex mediated ITGB1 recycling in basal insulin secretion	Molecular metabolism	2022	RNA-Seq	Mice
Long Non-Coding RNAs Might Regulate Phenotypic Switch of Vascular Smooth Muscle Cells Acting as ceRNA: Implications for In-Stent Restenosis	International Journal of Molecular Sciences	2022	RNA-Seq	human
Identification of a Gut Commensal That Compromises the Blood Pressure-Lowering Effect of Ester Angiotensin-Converting Enzyme Inhibitors	Hypertension	2022	Sanger Sequencing	Bacteria
FIONA1-mediated methylation of the 3’UTR of FLC affects FLC transcript levels and flowering in Arabidopsis	PLoS Genetics	2022	Nanopore Direct RNA Sequencing	Arabidopsis thaliana
Phage genome cleavage enables resuscitation from Cas13-induced bacterial dormancy	bioRxiv	2022	Epigenomics Sequencing;PacBio SMRT Sequencing	Bacteria/Phage
The m6A writer FIONA1 methylates the 3’UTR of FLC and controls flowering in Arabidopsis	bioRxiv	2022	Nanopore Direct RNA Sequencing	Arabidopsis thaliana
Folate Carrier Deficiency Drives Differential Methylation and Enhanced Cellular Potency in the Neural Plate Border	Frontiers in Cell and Developmental Biology	2022	Reduced Representation Bisulfite Sequencing	Fertile chicken eggs
Endothelial Cell-Specific Molecule-1 Inhibits Albuminuria in Diabetic Mice	Kidney360	2022	RNA-Seq	Mice
Genomic imprinting-like monoallelic paternal expression determines sex of channel catfish	Science Advances	2022	Whole Genome Bisulfite Sequencing (WGBS)	Fish
Microbial adaptation and response to high ammonia concentrations and precipitates during anaerobic digestion under psychrophilic and mesophilic conditions	Water Research	2021	16S/18S/ITS Amplicon Sequencing;WGS	Bacteria
Complete Genome Sequences of Four Canadian Mycoplasma bovis Strains Isolated from Bison and Cattle	Microbiology Resource Announcements	2021	WGS;Bacterial Whole Genome de novo Sequencing	Mycoplasma bovis Strains
Chitinase Chit62J4 Essential for Chitin Processing by Human Microbiome Bacterium Clostridium paraputrificum J4	Molecules	2021	Metagenomic Shotgun Sequencing	Clostridium paraputrificum J4
Variable Response of Norepinephrine Transporter to Traumatic Stress and Relationship to Hyperarousal	Frontiers in Behavioral Neuroscience	2021	NGS-BSP	rats
Long-Term Effects of Dietary Supplementation with Olive Oil and Hydrogenated Vegetable Oil on the Rumen Microbiome of Dairy Cows	Microorganisms	2021	16S/18S/ITS Amplicon Sequencing	Bacteria
Temporal genome-wide DNA methylation signature of post-smolt Pacific salmon challenged with Piscirickettsia salmonis	Epigenetics	2021	Reduced Representation Bisulfite Sequencing	Piscirickettsia salmonis
Harnessing the Genetic Plasticity of Porcine Circovirus Type 2 to Target Suicidal Replication	Viruses	2021	Genomics Sequencing	Porcine Circovirus Type 2
Genome-Wide Identification and Bioinformatics Characterization of Superoxide Dismutases in the Desiccation-Tolerant Cyanobacterium Chroococcidiopsis sp. CCMEE 029	Frontiers in Microbiology	2021	Genomics Sequencing	Chroococcidiopsis sp. CCMEE 029
A Comparative Pilot Study of Bacterial and Fungal Dysbiosis in Neurodevelopmental Disorders and Gastrointestinal Disorders: Commonalities, Specificities and Correlations with Lifestyle	Microorganisms	2021	16S/18S/ITS Amplicon Sequencing	Bacteria; fungus
Identifying regulators of parental imprinting by CRISPR/Cas9 screening in haploid human embryonic stem cells	Nature Communications	2021	Reduced Representation Bisulfite Sequencing	human
Evaluating the role of coevolution in a horizontally transmitted mutualism	bioRxiv	2021	RAD-seq Service	Anasa tristis
Type I Interferon Acts as a Major Barrier to the Establishment of Persistent Infectious Bursal Disease Virus Infections	Journal of virology	2021	Genomics Sequencing	Virus
A Splice Variant in SLC16A8 Gene Leads to Lactate Transport Deficit in Human iPS Cell-Derived Retinal Pigment Epithelial Cells	Cells	2021	Sanger Sequencing;Genotyping	human
MLST-Based Analysis and Antimicrobial Resistance of Staphylococcus epidermidis from Cases of Sheep Mastitis in Greece	Biology	2021	Sanger Sequencing;Genotyping	Staphylococcus epidermidis
The effects of atrazine on the microbiome of the eastern oyster: Crassostrea virginica	Scientific reports	2020	16S/18S/ITS Amplicon Sequencing	Bacteria
Draft Genome Sequence and Annotation of Paracoccus versutus MAL 1HM19, a Nitrate-Reducing, Sulfide-Oxidizing Bacterium	Microbiology Resource Announcements	2020	DNA sequencing	Paracoccus versutus MAL 1HM19
Acidithiobacillus ferrianus sp. nov.: an ancestral extremely acidophilic and facultatively anaerobic chemolithoautotroph	Extremophiles	2020	Genomics Sequencing	Acidithiobacillus ferrianus sp. nov.
Integration of whole-genome DNA methylation data with RNA sequencing data to identify markers for bull fertility	Animal genetics	2020	Whole Genome Bisulfite Sequencing (WGBS)	bull
Complete mitochondrial genome of the gray reef shark, Carcharhinus amblyrhynchos (Carcharhiniformes: Carcharhinidae)	Mitochondrial DNA Part B	2020	Mitochondrial DNA (mtDNA) Sequencing	gray reef shark Carcharhinus amblyrhynchos
Complete Genome Sequence of the Lignocellulose-Degrading Actinomycete Streptomyces albus CAS922	Microbiology Resource Announcements	2020	Nanopore Sequencing	Actinomycete Streptomyces albus CAS922
Mitochondrial genome of the Silvertip shark, Carcharhinus albimarginatus, from the British Indian Ocean Territory	Mitochondrial DNA Part B	2020	Mitochondrial DNA (mtDNA) Sequencing	Carcharhinus albimarginatus
High-Density Mapping and Candidate Gene Analysis of Pl18 and Pl20 in Sunflower by Whole-Genome Resequencing	International Journal of Molecular Sciences	2020	Whole Genome Sequencing	Sunflower
The genetic legacy of fragmentation and overexploitation in the threatened medicinal African pepper-bark tree, Warburgia salutaris	Scientific reports	2020	Microsatellite Development	Warburgia salutaris
Genome Analysis and Replication Studies of the African Green Monkey Simian Foamy Virus Serotype 3 Strain FV2014	Viruses	2020	Viral Genome Sequencing	Simian Foamy Virus
Isolation and characterization of new human carrier peptides from two important vaccine immunogens	Vaccine	2020	HLA Typing	human
Genomic and chemical evidence for local adaptation in resistance to different herbivores in Datura stramonium	Evolution	2020	ddRAD-seq	plant
Streptomyces buecherae sp. nov., an actinomycete isolated from multiple bat species	Antonie Van Leeuwenhoek	2020	PacBio SMRT Sequencing	Streptomyces buecherae sp. nov.
Merkel Cell Polyomavirus Encodes Circular RNAs (circRNAs) Enabling a Dynamic circRNA/microRNA/mRNA Regulatory Network	Mbio	2020	CircRNA Sequencing	cell
Change in Weight, BMI, and Body Composition in a Population-Based Intervention Versus Genetic-Based Intervention: The NOW Trial	Obesity	2020	HLA Typing	human
Atrazine Removal from Municipal Wastewater Using a Membrane Bioreactor	International journal of environmental research and public health	2020	16S/18S/ITS Amplicon Sequencing	Bacteria
RNA-Seq profiling of leukocytes reveals a sex-dependent global circular RNA upregulation in multiple sclerosis and 6 candidate biomarkers	Human Molecular Genetics	2020	RNA-Seq	human
Comparative Evolutionary Patterns of Burkholderia cenocepacia and B. multivorans During Chronic Co-infection of a Cystic Fibrosis Patient Lung	Frontiers in Microbiology	2020	Whole Genome Sequencing	Bacteria
Biomarker Preservation and Survivability Under Extreme Dryness and Mars-Like UV Flux of a Desert Cyanobacterium Capable of Trehalose and Sucrose Accumulation	Frontiers in Astronomy and Space Sciences	2020	Genomics Sequencing	Chroococcidiopsis sp. CCMEE 029
Molecular dissection of resistance gene cluster and candidate gene identification of Pl17 and Pl19 in sunflower by whole-genome resequencing	Scientific Reports	2019	Whole Genome Sequencing	sunflower
Generation of a highly attenuated strain of Pseudomonas aeruginosa for commercial production of alginate	Microbial Biotechnology	2019	Whole Genome Sequencing	Pseudomonas aeruginosa
The Effect of Genetically Guided Mathematical Prediction and the Blood Pressure Response to Pharmacotherapy in Hypertension Patients	Clinical Medicine Insights: Cardiology	2019	Genotyping	human
Evaluating the impact of the biocontrol agent Trichoderma harzianum ITEM 3636 on indigenous microbial communities from field soils	Journal of Applied Microbiology	2019	16S/18S/ITS Amplicon Sequencing	Soil
Circular DNA tumor viruses make circular RNAs	Proceedings of the National Academy of Sciences	2018	CircRNA Sequencing	human
Algal–bacterial synergy in treatment of winery wastewater	NPJ Clean Water	2018	16S/18S/ITS Amplicon Sequencing	green algae
Embryonic origin and genetic basis of cave associated phenotypes in the isopod crustacean Asellus aquaticus	Scientific Reports	2018	MassARRAY SNP Genotyping	isopod crustacean Asellus aquaticus
Alternatively spliced variants in Atlantic cod (Gadus morhua) support response to variable salinity environment	Scientific Reports	2018	RNA-Seq	Fish
Downregulated PITX1 Modulated by MiR-19a-3p Promotes Cell Malignancy and Predicts a Poor Prognosis of Gastric Cancer by Affecting Transcriptionally Activated PDCD5	Cellular Physiology and Biochemistry	2018	ChIP-Seq	human
Complete Genome Sequence of a Naturally Occurring Simian Foamy Virus Isolate from Rhesus Macaque (SFVmmu_K3T)	Genome Announcements	2017	Viral Genome Sequencing	Simian Foamy Virus
Scanning indels in the 5q22.1 region and identification of the TMEM232 susceptibility gene that is associated with atopic dermatitis in the Chinese Han population	Gene	2017	MassARRAY SNP Genotyping	human
Investigation of the Role of Genes Encoding Zinc Exporters zntA, zitB, and fieF during Salmonella Typhimurium Infection	Frontiers in microbiology	2017	Whole Genome Sequencing	Bacteria