Streptomyces buecherae sp. nov., an actinomycete isolated from multiple bat species |
Antonie van Leeuwenhoek |
2020 |
PacBio sequencing and library preparation |
Actinomycete |
Complete mitochondrial genome of the gray reef shark, Carcharhinus amblyrhynchos(Carcharhiniformes-Carcharhinidae) |
Mitochondrial DNA Part B Resources |
2020 |
mitochondrial genome sequencing |
Gray reef shark |
Metagenomics for taxonomy profiling- tools and approaches |
Bioengineered |
2020 |
metagenomic analysis |
Bacteria |
DNA methylome reprogramming in glioblastoma |
nature cancer |
2020 |
DNA methylome |
human |
Eye color prediction using the IrisPlex system: a limited pilot study in the Iraqi population |
Egyptian Journal of Forensic Sciences |
2020 |
MassARRAY SNP genotyping |
human |
Acidithiobacillus ferrianus sp. nov.: an ancestral extremely acidophilic and facultatively anaerobic chemolithoautotroph |
Extremophiles |
2020.1 |
16S Amplicon Sequencing |
Environmental sample |
Isolation and characterization of new human carrier peptides from two important vaccine immunogens |
Vaccine |
2020.2 |
HLA Typing |
human |
Draft Genome Sequence and Annotation of Paracoccus versutus MAL 1HM19, a Nitrate-Reducing, Sulfide-Oxidizing Bacterium |
Microbiology Resource Announcements |
2020.3 |
Microbial Whole Genome Sequencing |
Paracoccus versutus MAL 1HM19 |
Integration of whole-genome DNA methylation data with RNA sequencing data to identify markers for bull fertility |
Animal Genetics |
2020.4 |
Whole Genome Bisulfite Sequencing |
bull |
DNA methyltransferase implicated in the recovery of conidiation, through successive plant passages, in phenotypically degenerated Metarhizium |
Applied Microbiology and Biotechnology |
2020.4 |
Whole Genome Bisulfite Sequencing |
Metarhizium |
Association of the prophage BTP1 and the prophage encoded gene, bstA, with anti-virulence of Salmonella Typhimurium ST313 |
Pathog Dis. |
2020.4 |
Microbial Whole Genome Sequencing |
Salmonella Typhimurium |
Genome Analysis and Replication Studies of the African Green Monkey Simian Foamy Virus Serotype 3 Strain FV2014 |
Viruses |
2020.4 |
Viral Genome Sequencing |
simian foamy virus |
Atrazine Removal from Municipal Wastewater Using a Membrane Bioreactor |
Int. J. Environ. Res. Public Health |
2020.4 |
16S Amplicon Sequencing |
Environmental sample |
Complete Genome Sequence of the Lignocellulose-Degrading Actinomycete Streptomyces albus CAS922 |
Microbiology Resource Announcements |
2020.5 |
Bacterial Whole Genome de novo Sequencing;Oxford Nanopore sequencing |
Streptomyces albus CAS922 |
Mitochondrial genome of the Silvertip shark, Carcharhinus albimarginatus, from the British Indian Ocean Territory |
Mitochondrial DNA Part B |
2020.5 |
mitochondrial genome |
Carcharhinus albimarginatus |
Carotenoid Raman Signatures Are Better Preserved in Dried Cells of the Desert Cyanobacterium Chroococcidiopsis than in Hydrated Counterparts after High-Dose Gamma Irradiation |
life |
2020.6 |
Microbial Whole Genome Sequencing |
Chroococcidiopsis sp. CCMEE 029 |
Biomarker Preservation and Survivability Under Extreme Dryness and Mars-Like UV Flux of a Desert Cyanobacterium Capable of Trehalose and Sucrose Accumulation |
Frontiers in Astronomy and Space Sciences |
2020.7 |
Microbial Whole Genome Sequencing |
Chroococcidiopsis sp. CCMEE 029 |
The efects of atrazine on the microbiome of the eastern oyster: Crassostrea virginica |
Scientific Reports |
2020.7 |
16S Amplicon Sequencing |
Environmental sample |
Change in Weight, BMI, and Body Composition in a Population-Based Intervention Versus Genetic-Based Intervention: The NOW Trial |
CLINICAL TRIALS AND INVESTIGATIONS |
2020.8 |
MassARRAY SNP genotyping |
human |
Whole-Transcriptome Analysis in Peripheral Blood Mononuclear Cells from Patients with Lipid-Specific Oligoclonal IgM Band Characterization Reveals Two Circular RNAs and Two Linear RNAs as Biomarkers of Highly Active Disease |
biomedicines |
2020.8 |
RNA-seq |
human |
Genomic and chemical evidence for local adaptation in resistance to different herbivores in Datura stramonium |
Evolution |
2020.9 |
ddRAD-seq |
Datura stramonium |
Microbiota of the Digestive Gland of Red Abalone (Haliotis rufescens) Is Affected by Withering Syndrome |
microorganisms |
2020.9 |
16S Amplicon Sequencing |
Intestinal flora |
Streptomyces buecherae sp. nov., an actinomycete isolated from multiple bat species |
Antonie van Leeuwenhoek |
2020.9 |
Bacterial Whole Genome de novo Sequencing |
Streptomyces buecherae sp. nov. |
Comparative Evolutionary Patterns of Burkholderia cenocepacia and B. multivorans During Chronic Co-infection of a Cystic Fibrosis Patient Lung |
Front. Microbiol. |
2020.9 |
Microbial Whole Genome Sequencing |
Burkholderia cenocepacia and B. multivorans |
Complete mitochondrial genome of a gray reef shark, Carcharhinus amblyrhynchos (Carcharhiniformes: Carcharhinidae), from the Western Indian Ocean |
MITOCHONDRIAL DNA PART B |
2020.10 |
mitochondrial genome |
Carcharhinus amblyrhynchos |
RNA-Seq profiling of leukocytes reveals a sex-dependent global circular RNA upregulation in multiple sclerosis and 6 candidate biomarkers |
Human Molecular Genetics |
2020.10 |
RNA-seq |
human |
Type I Interferon acts as a major barrier to the establishment of infectious bursal disease virus (IBDV) persistent infections |
Journal of Virology |
2020.10 |
Viral Genome Sequencing |
Infectious bursal disease virus |
Hydrogen-Oxidizing Bacteria Are Abundant in Desert Soils and Strongly Stimulated by Hydration |
American Society for Microbiology Journals |
2020.11 |
Metagenomic Shotgun Sequencing |
Environmental sample |
The genetic legacy of fragmentation and overexploitation in the threatened medicinal African pepper-bark tree, Warburgia salutaris |
scientific reports |
2020.11 |
SSR development |
Warburgia salutaris |
Metagenomics for taxonomy profiling: tools and approaches |
Bioengineered |
2020.12 |
Metagenomic data analysis |
|
Temporal genome-wide DNA methylation signature of post-smolt Pacific salmon challenged with Piscirickettsia salmonis |
Epigenetics |
2020.12 |
RRBS |
Pacific salmon |
Merkel Cell Polyomavirus Encodes Circular RNAs (circRNAs) Enabling a Dynamic circRNA/microRNA/mRNA Regulatory Network |
American Society for Microbiology Journals |
2020.12 |
CircRNA Sequencing |
human |
High-Density Mapping and Candidate Gene Analysis of Pl18 and Pl20 in Sunflower by Whole-Genome Resequencing |
Int. J. Mol. Sci. |
2020.12 |
Whole Genome Sequencing |
sunflower |
Molecular dissection of resistance gene cluster and candidate gene identification of Pl17 and Pl19 in sunflower by whole-genome resequencing |
Scientific Reports |
2019 |
Whole Genome Sequencing |
sunflower |
Genetic variants in the bipolar disorder risk locus SYNE1 that affect CPG2 expression and protein function |
Molecular Psychiatry |
2019.1 |
Targeted Region Sequencing |
human |
Phylogeny Characterization of Seb Gene Encoding Enterotoxins in Staphylococcus aureus Isolated from Raw Milk and Cheese |
RESEARCH ARTICLE |
2019.2 |
Sanger sequencing |
Staphylococcus aureus |
Immune tolerance attenuates gut dysbiosis, dysregulated uterine gene expression and high-fat diet potentiated preterm birth in mice |
OBSTETRICS |
2019.2 |
16S Amplicon Sequencing |
Intestinal flora |
Effect of Dietary Carbohydrate-to-Protein Ratio on Gut Microbiota in Atlantic Salmon (Salmo salar) |
animals |
2019.3 |
16S Amplicon Sequencing |
Intestinal flora |
Identification of diverse integron and plasmid structures carrying a novel carbapenemase among Pseudomonas species |
Front. Microbiol. |
2019.3 |
Bacterial Whole Genome de novo Sequencing |
Pseudomonas aeruginosa |
Generation of a highly attenuated strain of Pseudomonas aeruginosa for commercial production of alginate |
Microbial biotechnology |
2019.4 |
Microbial Whole Genome Sequencing |
Pseudomonas aeruginosa |
The Effect of Genetically Guided Mathematical Prediction and the Blood Pressure Response to Pharmacotherapy in Hypertension Patients |
Clin Med Insights Cardiol. |
2019.5 |
MassARRAY SNP Genotyping |
human |
Over-Expression of UV-Damage DNA Repair Genes and Ribonucleic Acid Persistence Contribute to the Resilience of Dried Biofilms of the Desert Cyanobacetrium Chroococcidiopsis Exposed to Mars-Like UV Flux and Long-Term Desiccation |
Front. Microbiol. |
2019.10 |
Microbial Whole Genome Sequencing |
Chroococcidiopsis sp. CCMEE 029 |
Exploring Actinobacteria Associated With Rhizosphere and Endosphere of the Native Alpine Medicinal Plant Leontopodium nivale Subspecies alpinum |
Front. Microbiol. |
2019.11 |
16S Amplicon Sequencing |
plant tissues |
Investigation of the role of genes encoding zinc exporters zntA, zitB, and fieF during Salmonella Typhimurium infection |
Front. Microbiol. |
2018.1 |
Microbial Whole Genome Sequencing |
Salmonella |
Draft Genome Sequences of Anaplasma phagocytophilum, A. marginale, and A. ovis Isolates from Different Hosts |
American Society for Microbiology Journals |
2018.2 |
Whole Genome Sequencing |
A. phagocytophilum (human), A. marginale (cattle), and A. ovis (goat) |
Algal–bacterial synergy in treatment of winery wastewater |
npj clean wate |
2018.5 |
16S Amplicon Sequencing |
Environmental sample |
Neuropilin-1 promotes the oncogenic Tenascin-C/integrin β3 pathway and modulates chemoresistance in breast cancer cells |
Research article |
2018.5 |
RNA-seq |
human |
Downregulated PITX1 Modulated by MiR19a-3p Promotes Cell Malignancy and Predicts a Poor Prognosis of Gastric Cancer by Affecting Transcriptionally Activated PDCD5 |
Cell Physiol Biochem. |
2018.5 |
ChIP-seq |
human |
Classification of genera of Pasteurellaceae using conserved predicted protein sequences |
RESEARCH ARTICLE |
2018.6 |
Microbial Whole Genome Sequencing |
Avibacterium gallinarum and Avibacterium paragallinarum |
Alternatively spliced variants in Atlantic cod (Gadus morhua) support response to variable salinity environment |
Scientific Reports |
2018.8 |
RNA-seq |
Gadus morhua |
Circular DNA tumor viruses make circular RNAs |
PNAS |
2018.11 |
CircRNA Sequencing |
human |
Embryonic origin and genetic basis of cave associated phenotypes in the isopod crustacean Asellus aquaticus |
Scientific reports |
2018.11 |
MassARRAY SNP Genotyping |
Asellus aquaticus |
Evaluating the impact of the biocontrol agent Trichoderma harzianum ITEM 3636 on indigenous microbial communities from field soils |
Journal of Applied Microbiology |
2018.11 |
16S/18S/ITS Amplicon Sequencing |
Environmental sample |
Putrescine biosynthesis and export genes are essential for normal growth of avian pathogenic Escherichia coli |
BCM Microbiology |
2018.12 |
Microbial Whole Genome Sequencing |
Escherichia coli |
Scanning indels in the 5q22.1 region and identification of the TMEM232 susceptibility gene that is associated with atopic dermatitis in the Chinese Han population |
Gene |
2017.3 |
MassARRAY SNP Genotyping |
human |
Identification of factors required for m6A mRNA methylation in Arabidopsis reveals a role for the conserved E3 ubiquitin ligase HAKAI |
New phytologist |
2017.5 |
Whole Genome Sequencing |
Arabidopsis |
Impact of the OATP1B1 c.521T>C single nucleotide polymorphism on the pharmacokinetics of exemestane in healthy post-menopausal female volunteers |
ORIGINAL ARTICLE |
2017.5 |
MassARRAY SNP Genotyping |
human |
Complete Genome Sequence of a Naturally Occurring Simian Foamy Virus Isolate from Rhesus Macaque (SFVmmu_K3T) |
Genome Announc. |
2017.8 |
Viral Genome Sequencing |
simian foamy virus |
Identification and Initial Characterization of the Effectors of an Anther Smut Fungus and Potential Host Target Proteins |
Int J Mol Sci. |
2017.11 |
cDNA Library Construction |
yeast |