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Custom Vitreoretinopathy Panel

Custom Vitreoretinopathy Panel

What is vitreoretinopathy?

Vitreoretinopathy is an autosomal and X-linked genetic eye disorder with pathological features associated with vitreous and retinal degeneration, which can cause irreversible loss of vision. Early phenotypes of the disease include decreased vision, cataracts, retinal detachment, glaucoma, neovascularization and peripheral fibro-vascular proliferation, and traction retinal detachment. These familial diseases include Wagner syndrome, Stickler syndrome, Knobloch syndrome, Norrie disease, retinoschisis and exudative vitreoretinopathy. Vitreoretinopathy has high variability in clinical phenotypes, involving mutations of approximate 250 genes. And this disease can be induced by secondary complications such as diabetes. However, there is no effective treatment for this disease.

Disease-related gene description

Vitreoretinopathy is an ocular disorder caused by genetic mutations. Many decisive genes involved in this disease are located in chromosome 11. Bestrophin-1 encoded by BEST1 gene is highly expressed in the retina, which is involved in the membrane integrity. The mutation in BEST1 gene has been verified to be associated with more than five types of retinopathy. The protein encoded by CAPN5 gene is a calcium-dependent protein kinase involved in signal transduction. The mutations of CAPN5 gene alter its enzymatic activity that causes neovascular inflammatory. ZNF408 is associated to exudative vitreoretinopathy and retinal pigmentation if homozygous mutations occur. And the protein regulated by FZD4 is involved in the development of retinal blood vessels in vertebrates. Mutations of FZD4 fail to response Norrin induced signaling and further lead to Familial exudative vitreoretinopathy (FEVR). Structural protein family coding gene COL is related to Stickler Syndrome, Knobloch Syndrome and Marshall Syndrome. Other genes such as KIF11, KCNJ13, LRP5, NR2E3, NDP, RS1, TSPAN12, VCAN, etc. are also related to vitreoretinopathy.

Our platform provides the comprehensive and efficient targeted DNA Sequencing by the Illumina MiSeq system/Ion PGM system to verify the potential pathogenic nucleotide variants. We also offer detailed vitreoretinopathy-related gene list, from which you can choose genes you are interested in for genetic testing.

Custom vitreoretinopathy panel offers but are not limited to:

  • High-performance target DNA sequencing and analysis provide an efficient strategy for sequencing eye diseases related genes. Our panel is designed to prioritize relevant genomic regions.
  • Detected pathogenic variants will be checked weather their frequency is below 1% in the control population.
  • Use stablished bioinformatics algorithms (SIFT, LRT, CADD, PolyPhen2, Mutation Taster and NetGene2) for detailed analysis.
  • Strictly controlled high quality operation guarantees reliable and repeatable results.

Choose the genes that suit you from the vitreoretinopathy gene list

BEST1 CAPN5 ZNF408 FZD4
ATOH7 COL11A2 COL18A1 COL2A1
COL9A1 COL9A2 COL9A3 CTC1
CTTNNB1 KCNJ13 KIF11 NDP
NR2E3 P3H2 RS1 TSPAN12
VCAN LRP5 RS1

Specimen requirements of our custom vitreoretinopathy panel

  • Specimen: blood, saliva or extracted DNA.
  • Volume: 3 mL blood, 2 mL saliva and 3ug DNA.
  • Collection: blood is collected by routine blood collection and saliva is collected by saliva collection kits (kits are available upon request). DNA samples are stored in TE buffer or equivalent.
  • Container: lavender-top (EDTA) tube or yellow-top (ACD) tube.
  • Storage/transport temperature: room temperature.

Gene panel workflow

Gene panel workflow

For more information about the Custom Vitreoretinopathy Panel or need other amplification requirements, please contact us.

References:

  1. Berger W, Kloeckener-Gruissem B, et al. The molecular basis of human retinal and vitreoretinal diseases. Progress in retinal and eye research, 2010, 29(5): 335-375.
  2. Tiwari A, Bahr A, Bähr L, et al. Next generation sequencing based identification of disease-associated mutations in Swiss patients with retinal dystrophies. Scientific reports, 2016, 6: 28755.
  3. Lamandé S R, Bateman J F. Genetic disorders of the extracellular matrix. The Anatomical Record, 2019.
  4. Patronas M, Kroll A J, et al. A review of vitreoretinal interface pathology. International ophthalmology clinics, 2009, 49(1): 133-143.
  5. Snead M P. Hereditary vitreopathy. Eye, 1996, 10(6): 653.
  6. Johnson A A, Guziewicz K E, et al. Bestrophin 1 and retinal disease. Progress in retinal and eye research, 2017, 58: 45-69.
  7. Shastry B S. Genetic susceptibility to advanced retinopathy of prematurity (ROP). Journal of biomedical science, 2010, 17(1): 69.
* For Research Use Only. Not for use in diagnostic procedures.

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