# CD Genomics

> A leading global genomics service provider offering comprehensive next-generation sequencing (NGS), third-generation sequencing, microarray, and bioinformatics solutions for research institutions, pharmaceutical companies, and biotech industries.

CD Genomics provides end-to-end genomics services spanning whole genome sequencing, transcriptomics, epigenomics, targeted sequencing, genotyping, and microbial genomics. With advanced platforms including Illumina, PacBio SMRT, and Oxford Nanopore, the company delivers high-quality data and expert bioinformatics support for diverse research applications.

## Whole Genome Sequencing

- [De Novo Whole Genome Sequencing](https://www.cd-genomics.com/de-novo-whole-genome-sequencing-service.html): Reference-free genome assembly service for novel species using hybrid sequencing approaches.
- [Plant/Animal Whole Genome De Novo Sequencing](https://www.cd-genomics.com/plant-animal-whole-genome-denovo-sequencing.html): Comprehensive de novo genome assembly solutions for eukaryotic organisms combining short and long-read technologies.
- [Human Whole Genome PacBio SMRT Sequencing](https://www.cd-genomics.com/human-whole-genome-pacbio-smrt-sequencing.html): Complete human genome sequencing using PacBio HiFi reads for phased assembly and comprehensive variant calling.

## Targeted and Amplicon Sequencing

- [Amplicon Sequencing Services](https://www.cd-genomics.com/amplicon-sequencing-services.html): PCR-based targeted sequencing for specific genomic regions, enabling cost-effective and high-depth analysis of genes of interest.
- [Whole Exome Sequencing](https://www.cd-genomics.com/whole-exome-sequencing.html): Comprehensive capture and sequencing of all protein-coding regions (exons) for variant discovery and disease research.
- [Long Amplicon Analysis (LAA)](https://www.cd-genomics.com/long-amplicon-analysis-laa.html): PacBio-based long-read amplicon sequencing for full-length gene characterization and haplotype phasing.
- [Mitochondrial DNA (mtDNA) Sequencing](https://www.cd-genomics.com/mitochondrial-dna-mtdna-sequencing.html): Complete mitochondrial genome sequencing for population genetics, forensics, and disease studies.
- [Targeted Region Sequencing](https://www.cd-genomics.com/targeted-region-sequencing.html): Customized capture-based sequencing of specific genomic regions for focused research applications.
- [Human Mitochondrial DNA Sequencing](https://www.cd-genomics.com/human-mitochondrial-dna-mtdna-sequencing.html): Specialized human mtDNA analysis for clinical research, ancestry studies, and mitochondrial disease investigation.
- [Animal/Plant Exome Sequencing](https://www.cd-genomics.com/animal-plant-exome-sequencing-service.html): Exome capture and sequencing services tailored for non-human species in agricultural and ecological research.
- [Nanopore Amplicon Sequencing](https://www.cd-genomics.com/nanopore-amplicon-sequencing.html): Long-read nanopore-based amplicon sequencing for real-time, portable genomic analysis.
- [Nanopore Target Sequencing](https://www.cd-genomics.com/nanopore-target-sequencing.html): Adaptive sampling and targeted nanopore sequencing for specific regions of interest.

## Epigenomics Services

- [Epigenomics Overview](https://www.cd-genomics.com/epigenomics.html): Comprehensive epigenetic profiling services including DNA methylation, histone modifications, and chromatin accessibility.
- [ATAC-Seq](https://www.cd-genomics.com/atac-seq.html): Assay for Transposase-Accessible Chromatin sequencing to map open chromatin regions and regulatory elements.
- [ChIP-Seq](https://www.cd-genomics.com/chip-seq.html): Chromatin Immunoprecipitation sequencing for genome-wide mapping of protein-DNA interactions and histone modifications.
- [CUT&Tag Sequencing](https://www.cd-genomics.com/cut-tag-sequencing.html): Cleavage Under Targets and Tagmentation for efficient chromatin profiling with low cell input.
- [DAP-Seq Service](https://www.cd-genomics.com/dap-seq-service.html): DNA Affinity Purification sequencing for identifying transcription factor binding sites in vitro.

## DNA Methylation Analysis

- [Whole Genome Bisulfite Sequencing (WGBS)](https://www.cd-genomics.com/whole-genome-bisulfite-sequencing.html): Single-base resolution methylome analysis across the entire genome.
- [Reduced Representation Bisulfite Sequencing (RRBS)](https://www.cd-genomics.com/reduced-representation-bisulfite-sequencing.html): Cost-effective bisulfite sequencing focusing on CpG-rich regions for methylation analysis.
- [Targeted Bisulfite Sequencing](https://www.cd-genomics.com/targeted-bisulfite-sequencing.html): Customized bisulfite sequencing of specific genomic regions for focused methylation studies.
- [EM-Seq Service](https://www.cd-genomics.com/em-seq-service.html): Enzymatic Methyl-Seq for gentle, enzyme-based DNA methylation detection as an alternative to bisulfite conversion.
- [MeDIP Sequencing](https://www.cd-genomics.com/medip-sequencing.html): Methylated DNA Immunoprecipitation sequencing for genome-wide DNA methylation analysis.
- [hMeDIP-Seq](https://www.cd-genomics.com/hmedip-seq.html): Hydroxymethylated DNA Immunoprecipitation sequencing for 5-hydroxymethylcytosine (5hmC) profiling.

## DNA Methylation Microarray

- [DNA Methylation Microarray Service](https://www.cd-genomics.com/dna-methylation-microarray-service.html): Array-based methylation profiling for high-throughput epigenetic screening.
- [Methylation Screening Array 270K](https://www.cd-genomics.com/methylation-screening-array-270k-service.html): Cost-effective 270K array for methylation screening across key CpG sites.
- [DNA Methylation Assay Illumina 935K](https://www.cd-genomics.com/dna-methylation-assay-illumina-935k-service.html): Illumina Infinium MethylationEPIC v2.0 array covering over 935,000 methylation sites for comprehensive epigenome-wide association studies.

## RNA Modification and Epitranscriptomics

- [MeRIP Sequencing](https://www.cd-genomics.com/merip-sequencing.html): Methylated RNA Immunoprecipitation sequencing for m6A and other RNA methylation mapping.
- [RNA Methylation Sequencing](https://www.cd-genomics.com/rna-methylation-sequencing-service.html): Comprehensive epitranscriptomic analysis of various RNA methylation marks.
- [2'-O-RNA Methylation Sequencing](https://www.cd-genomics.com/2-o-rna-methylation-sequencing-service.html): Detection and mapping of 2'-O-methylation modifications on RNA molecules.
- [acRIP-Seq](https://www.cd-genomics.com/epigenetics/acrip-seq.html): Acetylated RNA Immunoprecipitation sequencing for N4-acetylcytidine (ac4C) modification analysis.

## Genotyping Services

- [Genotyping Overview](https://www.cd-genomics.com/genotyping.html): Comprehensive genotyping solutions using sequencing and array-based platforms for SNP and variant detection.
- [Genotyping by Sequencing (GBS)](https://www.cd-genomics.com/genotyping-by-sequencing-gbs.html): Reduced-representation sequencing approach for efficient genome-wide SNP discovery and genotyping.
- [RAD-Seq Service](https://www.cd-genomics.com/rad-seq-service.html): Restriction site Associated DNA sequencing for SNP discovery and population genomics studies.
- [ddRAD-Seq](https://www.cd-genomics.com/ddrad-seq.html): Double-digest Restriction site Associated DNA sequencing for high-density SNP genotyping.
- [2b-RAD Sequencing](https://www.cd-genomics.com/2b-rad.html): Type IIB restriction enzyme-based RAD sequencing for flexible and cost-effective genotyping.
- [Microsatellite Genotyping Service](https://www.cd-genomics.com/microsatellite-genotyping-service.html): SSR marker analysis for population genetics, parentage testing, and genetic mapping.
- [Microsatellite Instability Analysis](https://www.cd-genomics.com/microsatellite-instability-analysis.html): MSI testing for cancer diagnostics and immunotherapy response prediction.
- [Microsatellite Development](https://www.cd-genomics.com/microsatellite-development.html): De novo identification and development of microsatellite markers for non-model organisms.
- [DNA Barcoding](https://www.cd-genomics.com/dna-barcoding.html): Species identification and authentication using standardized DNA barcode markers (COI, rbcL, ITS).

## Genotyping Arrays

- [GSA-8 Array](https://www.cd-genomics.com/gsa-8.html): Illumina Global Screening Array (8-sample format) for genome-wide genotyping and GWAS.
- [Infinium GSA-24 Array](https://www.cd-genomics.com/infinium-gsa-24.html): High-throughput 24-sample Global Screening Array for large-scale population studies.

## Long-Read Sequencing (Third Generation)

- [PacBio SMRT Sequencing](https://www.cd-genomics.com/pacbio-smrt-sequencing.html): Single Molecule Real-Time sequencing for highly accurate long reads, ideal for genome assembly and structural variant detection.
- [Nanopore Sequencing](https://www.cd-genomics.com/nanopore-sequencing-1.html): Oxford Nanopore long-read sequencing for real-time, ultra-long read generation and direct DNA/RNA analysis.
- [Nanopore Ultra-Long Sequencing](https://www.cd-genomics.com/nanopore-ultra-long-sequencing.html): Generation of ultra-long reads (>100kb) for resolving complex genomic regions and structural variants.
- [Nanopore Direct RNA Sequencing](https://www.cd-genomics.com/nanopore-direct-rna-sequencing.html): Native RNA sequencing without reverse transcription, enabling direct detection of RNA modifications.
- [Pore-C](https://www.cd-genomics.com/pore-c.html): Nanopore-based chromatin conformation capture for multi-way contact mapping and 3D genome architecture analysis.

## Transcriptomics and RNA Sequencing

- [RNA-Seq Transcriptome](https://www.cd-genomics.com/rna-seq-transcriptome.html): Standard RNA sequencing for gene expression profiling, differential expression analysis, and transcriptome characterization.
- [mRNA Sequencing Service](https://www.cd-genomics.com/mrna-sequencing-service.html): Poly(A)-selected mRNA sequencing for protein-coding gene expression analysis.
- [Targeted RNA Sequencing](https://www.cd-genomics.com/targeted-rna-sequencing.html): Panel-based RNA sequencing for focused analysis of specific gene sets or pathways.
- [MicroRNA Sequencing Service](https://www.cd-genomics.com/microrna-sequencing-service.html): Small RNA sequencing for miRNA discovery, profiling, and target prediction.
- [Exosomal RNA Sequencing](https://www.cd-genomics.com/exosomal-rna-sequencing.html): RNA profiling of exosome-derived transcripts for liquid biopsy and intercellular communication research.
- [tRNA Sequencing Service](https://www.cd-genomics.com/trna-sequencing-service.html): Transfer RNA profiling for understanding translation regulation and tRNA modifications.
- [IVT mRNA Sequencing](https://www.cd-genomics.com/ivt-mrna-sequencing.html): Quality assessment and characterization of in vitro transcribed mRNA for therapeutics and vaccine development.
- [Poly(A) Sequencing (TAIL-Seq)](https://www.cd-genomics.com/polya-sequencing-tail-seq.html): Poly(A) tail length measurement and analysis for mRNA stability and translation studies.
- [TAIL-Iso-Seq Service](https://www.cd-genomics.com/tail-iso-seq-service.html): PacBio Iso-Seq combined with poly(A) tail analysis for full-length isoform characterization with tail length information.
- [10x Spatial Transcriptome Sequencing](https://www.cd-genomics.com/10x-spatial-transcriptome-sequencing-service.html): Visium spatial transcriptomics for mapping gene expression within tissue architecture.

## Translation and Ribosome Analysis

- [Ribosome Profiling](https://www.cd-genomics.com/ribosome-profiling.html): Ribo-Seq for genome-wide analysis of translation dynamics and ribosome positioning.
- [Polysome Sequencing](https://www.cd-genomics.com/polysome-sequencing.html): Sequencing of polysome-associated mRNAs to study active translation.

## RNA-Protein Interaction

- [CLIP-Seq](https://www.cd-genomics.com/clip-seq.html): Crosslinking and Immunoprecipitation sequencing for mapping RNA-protein interaction sites.
- [Cappable-Seq](https://www.cd-genomics.com/cappable-seq.html): Transcription Start Site (TSS) mapping through cap-dependent enrichment, primarily for prokaryotic transcriptomes.

## Immunogenomics

- [Immune Repertoire Sequencing](https://www.cd-genomics.com/immune-repertoire-sequencing.html): Comprehensive profiling of B-cell and T-cell receptor repertoires for immunology and immuno-oncology research.
- [TCR Sequencing (TCR-Seq)](https://www.cd-genomics.com/tcr-seq.html): T-cell receptor repertoire profiling to study adaptive immunity and immune responses.
- [BCR and TCR Sequencing](https://www.cd-genomics.com/biomedical-ngs/bcr-and-tcr-sequencing.html): Detailed B-cell receptor and T-cell receptor sequencing for clonality assessment and immune monitoring.
- [HLA Typing](https://www.cd-genomics.com/hla-typing.html): High-resolution Human Leukocyte Antigen typing for transplantation, disease association, and pharmacogenomics studies.

## CRISPR and Gene Editing Services
- [AAV Genome Sequencing](https://www.cd-genomics.com/aav-genome-sequencing.html): Complete sequencing and characterization of Adeno-Associated Virus (AAV) vectors for gene therapy development, including ITR integrity, transgene verification, and vector genome identity confirmation.
- [AAV Integration Sites Analysis](https://www.cd-genomics.com/aav-integration-sites-analysis.html): Genome-wide identification of AAV vector integration sites to assess insertional mutagenesis risk and ensure gene therapy safety.